This is a 2003 publication showing the relationship of the worlds populations by studying the crania. This paper says that both multiregional and the out of Africa scenario are possible from these results. As can be seen on the dendrogram, the Egyptian samples (Gizeh and Naqada) are on the North African twig along with the Nubians, which are themselves very close to the European cluster, which supports the Loring Brace study showing ancient Egyptians as being non-similar to Sub Saharan Africans. In fact a look at all the diagrams shows Hanihara grouping the ancient North Africans closer to west Eyurasian groups.
The only downer is that modern North Africans aren’t included on this.
I’ve added colour to the diagrams as they are a little hard to make out if you have poor sight. Sub Saharan is red (Somalis have a black dot inside) and Europeans are blue, North African samples are bright green, and South Asian are violet.
Characterization of Biological Diversity Through Analysis of Discrete Cranial Traits
Tsunehiko Hanihara,1* Hajime Ishida,2 and Yukio Dodo3, 2003
ABSTRACT In the present study, the frequency distributions of 20 discrete cranial traits in 70 major human
populations from around the world were analyzed. The principal-coordinate and neighbor-joining analyses of Smith’s mean measure of divergence (MMD), based on trait frequencies, indicate that 1) the clustering pattern is similar to those based on classic genetic markers, DNA polymorphisms, and craniometrics; 2) significant interregional separation and intraregional diversity are present in Subsaharan Africans; 3) clinal relationships exist among regional groups; 4) intraregional discontinuity exists in some populations inhabiting peripheral or isolated areas. For example, the Ainu are the most distinct outliers of the East Asian populations. These patterns suggest that founder effects, genetic drift, isolation, and population structure are the primary causes of regional variation in discrete cranial traits. Our results are compatible with a single origin for modern humans as well as the multiregional model, similar to the results of Relethford and Harpending ([1994] Am. J. Phys. Anthropol. 95:249– 270). The results presented here provide additional measures of the morphological variation and diversification of modern human populations.
East Asians
1. Japanese 98–108 (94) 62–64 (59) Tokyo and Tohoku (Northern Japan) regions (UT, TU)
2. Hokkaido Ainu 122–151 (113) 84–108 (76) Recent Ainu people (SMU, UT)
3. Sakhalin in Ainu 62–65 (54) 28–29 (32) Southern Sakhalin (MAE, MSU, KU, MH)
4. North Chinese 132–139 (75) 26–27 (14) Mainly from Liaoning Prefecture (UT, KU) Southeast Asians
5. Myanmar 132–135 (48) 47–49 (3) Recent Burmese (NHM, UC)
6. Mainland SE Asians 125–141 (105) 41–43 (30) Thai, Vietnam, Laos, Cambodia, and Malay (NHM, UC, MH)
7. Javanese 94–97 (83) 32–26 (32) Greater Sunda islands (NHM, UC, MH, AMNH)
8. Philippines 135–144 (49) 62–66 (31) Non-Negrito Filipinos (NHM, UC, MH)
9. Borneans 78–109 (74) 37–40 (21) Mainly land Dayaks (NHM, UC, MH)
10. Lesser Sunda 52–54 (39) 11–12 (6) Timor, Bali, Sumbawa, Flores, and Celebes Islands (NHM, UC, MH, AMNH)
11. Andamanese/Nicobarese 65–71 (43) 40–43 (30) Andaman Negritos and Nicobar Islands (NHM, UC, MH)
Northeast Asians
12. Mongolians 116–121 (69) 53–59 (38) Ulan Bator (Urga) and other regions (MH, NMNH, AMNH)
13. Buryats 76–81 (65) 64–69 (58) From Northeast Siberia (MAE, MH, NMNH)
14. Amur Basin 85–92 (57) 67–74 (48) Ulchs, Nanaians, Negidals, Nivkhs, and Orochs (MAE, MSU, MH)
15. Neolithic Baikalians 40–59 (45) 14–22 (19) From around Lake Baikal (MAE, MSU, ISU)
16. Yakuts 43–45 (38) 19–20 (18) From Northeast Siberia (MAE, MSU, MH) Arctic
17. Ekvens 45–55 (48) 49–56 (44) Iron-Age people from Ekven site, Chukot Peninsula (MSU)
18. Chukchis 43–48 (17) 22–26 (10) From Arctic region of Northeast Siberia (MAE, MSU, MH, NMNH, AMNH)
19. Aleuts 63–67 (48) 30–43 (17) Mainly from Unalaska Island (NMNH, AMNH)
20. Asian Eskimos 66–73 (48) 53–59 (16) From Arctic region of Northeast Siberia (MAE, MSU)
21. Greenland Eskimos 82–85 (47) 70–76 (25) West Coast of Greenland (NHM, UC, MH, AMNH, NMNH)
New World
22. Northwest Coast 53–59 (15) 29–35 (12) Northwest Coast of Canada (NHM, UC)
23. Northwest America 48–61 (40) 19–24 (16) Plateau, Great Basin, California, and Southwest Cultural
areas (NHM, UC, MH)
24. Northeast America 42–50 (20) 21–29 (8) Great Plains, Northeast, and Southeast Cultural areas
(NHM, UC)
25. Central America 45–58 (21) 24–30 (12) Mexico, Colombia, Ecuador, Carib, Venezuela, and Guyana
(NHM, UC)
26. Peruvians 115–123 (60) 55–60 (33) Cerro del Oro, Huacho, Pisagua, etc. (NHM)
27. Fuegians/Patagonians 39–44 (24) 20–23 (7) Terra del Fuego and Patagonia region (NHM, UC, MH)
Micronesians
28. Mariana 91–120 (82) 70–93 (75) Guam, Saipan, and Tinian (BM, MH) Polynesians
29. Hawaii 82 (58) 63–64 (42) Mainly from Oahu Island (NHM, UC)
30. Easter 63–79 (41) 59–71 (31) Easter Islanders (NHM, UC, MH, AM, US, SAM)
31. Marquesas 55–61 (24) 39–42 (9) Mainly from Uahuka Island (NHM, MH)
32. Maori 109–140 (58) 37–49 (23) New Zealand (NHM, UC, AM, US, SAM)
33. Moriori 66–78 (24) 18–20 (6) Chatham Islands (NHM, UC, AM, US) Melanesians
34. Papua New Guinea 54–175 (84) 51–154 (83) Purari River delta, Fly River delta, Sepik River Delta, etc.
(NHM, AM, US, SAM)
35. Torres Strait 59–65 (37) 35–38 (37) Island of Torres Strait (NHM, UC, MH)
36. North Melanesians 64–196 (119) 41–103 (72) New Ireland, New Britain, Solomon, and Santa Cruz (NHM,
UC, AM, US, SAM)
37. South Melanesians 58–137 (67) 27–57 (33) Loyalty, New Caledonia, Vanuatu, and Fiji (NHM, UC, AM,
US, SAM)
Australians
38. East Australians 53–88 (55) 33–46 (36) New South Wales, Queensland, and Victoria (AM, NHM, UC, MH, AMNH)
39. South/West Australians 86–260 (159) 34–128 (77) South Australia and Western Australia (SAM, NHM, UC, MH, AMNH)
Tibet/Nepal/Northeast India
40. Tibetans/Nepalese 91–94 (58) 23–25 (4) Tibetan Soldiers (19th Century), lowland of Nepal (NHM,
UC)
41. Assam/Sikkim 40–41 (30) 23–24 (19) Darjeeling, Assam, and Sikkim districts (NHM)
South Asians
42. Northeast India 90–93 (61) 23–24 (14) Bengal and Bihar districts (NHM)
43. South India 123–127 (65) 45–46 (30) Madras, Tamil Natu, Malabar Coast, and Karnataka (NHM)
44. Northwest India 125–131 (71) 32–35 (16) Punjab and Kashmir districts (NHM)
Central Asians
45. Tagars 62–72 (44) 60–76 (50) Iron-Age Tagar culture (MAE, MSU)
46. Kazakhs 75–77 (75) 42–43 (42) From Central Asia, Kazakh (MAE)
Europeans
47. Russians 72–74 (74) 45–47 (41) Recent Russians (NHM, UC, MAE, MSU)
48. Greece 46–54 (20) 12–16 (4) Ancient and recent Greece (NHM)
49. Eastern Europeans 80–98 (52) 18–24 (16) Slav group: Poland, Czecho, Hergegovina, Bulgaria, and
Yugoslavia (NHM)
50. Italy 131–146 (82) 42–47 (31) Recent Italians (NHM)
51. Finland/Ural 72–75 (35) 5–6 (2) Including a few samples of Ural-language people (NHM, MH)
52. Scandinavia 57–60 (30) 5 (3) Norwegians and Swedish (NHM, UC)
53. Germany 58–61 (44) 9–10 (7) Recent German (NHM, UC)
54. France 74–86 (23) 18–21 (0) Recent French (NHM, UC, MH)
UK series
55. Ensay 64–68 (58) 29–30 (30) Late Medieval to post-Medieval periods, Scotland (NHM)
56. Poundbury 97–109 (106) 46–52 (47) Late Roman period, Southwest England (NHM)
57. Spitalfields-1 122–135 (121) 104–113 (106) Mid-Victorian, London (NHM)
58. Spitalfields-2 73–74 (75) 17–19 (35) Pre-17th century, London (UC)
North Africans
59. Naqada 82–87 (57) 89–93 (39) Predynastic Egypt, ca. 5,000–4,000 BP (UC)
60. Gizeh 122–125 (91) 46–51 (32) 26th–30th Dynasty, Egypt, 664–343 BC (UC)
61. Kerma 114–132 (58) 79–92 (51) 12th–13th Dynasty of Nubia (UC)
62. Nubia 86–92 (39) 42–47 (9) Early Christian or Christian date Nubia (UC)
Subsaharan Africans
63. Somalia 58–64 (53) 10–12 (5) Erigavo District, Ogaden Somali (US)
64. Nigeria-1 74–83 (72) 65–76 (53) Ibo tribe (NHM, UC)
65. Nigeria-2 73–80 (17) 46–53 (7) Ashanti tribe (NHM, UC)
66. Gabon 82–86 (47) 55–57 (36) Fernand Vaz River (NHM, NMNH)
67. Tanzania 69–75 (54) 20–25 (17) Haya tribe, Musira Island, Lake Victoria (UC, NHM)
68. Kenya 71–82 (31) 55–63 (10) Bantu-speaking people from Kenya (UC, NHM)
69. South Africa 100–109 (53) 21–25 (8) Zulu and once called Kaffir tribes (UC, NHM, AMNH)
70. Khoisans 43–36 (28) 17–22 (13) Bushmans and Hottentots (NHM, UC, AMNH)
Fig. 2. Two-dimensional scattergrams drawn by using first-second (a), second-third (b), and third-fourth (c) principal coordinates. Numbers correspond to sample numbers in Table 1
Useful info for reference!
Mathilda's Anthropology Blog. 
